Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_5241KEGG: met:M446_3280 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Mnod_5240
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: met:M446_3279 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.703
Mnod_5242
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: met:M446_3281 3-hydroxyacyl-CoA dehydrogenase NAD-binding.
       0.600
Mnod_1170
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: met:M446_1812 glutamate synthase (ferredoxin).
       0.492
Mnod_0009
PFAM: BolA family protein; KEGG: met:M446_0006 BolA family protein; Belongs to the BolA/IbaG family.
  
    0.444
Mnod_6742
PFAM: BolA family protein; KEGG: met:M446_6494 BolA family protein; Belongs to the BolA/IbaG family.
  
    0.444
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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