Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5248PFAM: regulatory protein MarR; KEGG: rpt:Rpal_2690 transcriptional regulator, MarR family. (172 aa)    
Predicted Functional Partners:
Mnod_5247
KEGG: rpt:Rpal_2691 hypothetical protein.
 
     0.871
Mnod_5246
KEGG: rpt:Rpal_2692 hypothetical protein.
       0.791
Mnod_5249
PFAM: Catalase domain protein; KEGG: met:M446_3285 catalase.
  
  
 0.452
Mnod_5245
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: gdi:GDI1409 putative transposase.
       0.425
Mnod_1113
PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: met:M446_2151 MarR family transcriptional regulator.
  
   
 0.410
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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