Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_5292PFAM: manganese containing catalase; KEGG: mrd:Mrad2831_5945 manganese containing catalase. (304 aa)    
Predicted Functional Partners:
Mnod_1493
PFAM: protein of unknown function DUF892; KEGG: met:M446_0688 hypothetical protein.
 
  
 0.880
Mnod_2220
PFAM: protein of unknown function DUF892; KEGG: mex:Mext_3614 hypothetical protein.
 
  
 0.785
Mnod_4845
PFAM: protein of unknown function DUF892; KEGG: met:M446_6464 hypothetical protein.
 
  
 0.780
Mnod_5257
PFAM: protein of unknown function DUF892; KEGG: met:M446_3294 hypothetical protein.
 
  
 0.780
Mnod_0508
PFAM: beta-lactamase domain protein; KEGG: met:M446_1047 beta-lactamase domain-containing protein.
  
     0.716
Mnod_1656
KEGG: mpo:Mpop_3333 radical SAM domain protein.
  
     0.602
Mnod_7614
KEGG: met:M446_2534 hypothetical protein.
  
  
 0.565
Mnod_7449
Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.539
Mnod_3611
KEGG: met:M446_3958 hypothetical protein.
  
  
 0.532
Mnod_5293
PFAM: WD-40 repeat protein; cytochrome c class I; KEGG: met:M446_3100 cytochrome c class I.
       0.521
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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