STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5306PFAM: NUDIX hydrolase; KEGG: met:M446_5001 NUDIX hydrolase. (156 aa)    
Predicted Functional Partners:
Mnod_5307
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: met:M446_5002 fumarylacetoacetate (FAA) hydrolase.
       0.853
Mnod_0172
KEGG: met:M446_4587 hypothetical protein.
  
     0.688
Mnod_7506
KEGG: met:M446_6759 hypothetical protein.
 
     0.645
Mnod_5308
PFAM: FAD linked oxidase domain protein; KEGG: met:M446_5003 FAD linked oxidase domain-containing protein.
       0.626
Mnod_1064
PFAM: conserved hypothetical protein; KEGG: met:M446_2096 hypothetical protein.
 
     0.620
Mnod_7566
KEGG: met:M446_6830 hypothetical protein.
  
     0.611
Mnod_4517
KEGG: met:M446_3666 hypothetical protein.
  
     0.597
Mnod_7208
KEGG: met:M446_6292 hypothetical protein.
  
     0.584
Mnod_0719
PFAM: protein of unknown function DUF1214; KEGG: met:M446_1116 hypothetical protein.
  
     0.580
Mnod_4770
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: met:M446_4260 transglutaminase family protein cysteine peptidase BTLCP.
  
     0.565
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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