Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_5322PFAM: protein of unknown function DUF447; KEGG: met:M446_5018 hypothetical protein. (199 aa)    
Predicted Functional Partners:
Mnod_5321
PFAM: dihydropteroate synthase DHPS; KEGG: met:M446_5017 dihydropteroate synthase DhpS.
 
     0.965
Mnod_5323
KEGG: met:M446_5019 putative signal peptide.
 
     0.923
Mnod_5320
PFAM: aspartate/glutamate/uridylate kinase; KEGG: met:M446_5016 aspartate/glutamate/uridylate kinase.
 
     0.918
Mnod_5319
KEGG: met:M446_5015 hypothetical protein.
 
     0.917
Mnod_5324
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: met:M446_5020 YVTN beta-propeller repeat-containing protein.
 
     0.874
Mnod_6001
TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: met:M446_5777 beta-ribofuranosylaminobenzene 5'-phosphate synthase.
 
     0.811
Mnod_5999
TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: met:M446_5775 formylmethanofuran dehydrogenase subunit A.
 
     0.805
Mnod_6000
KEGG: met:M446_5776 tungsten-containing formylmethanofuran dehydrogenase, subunit B.
 
     0.805
Mnod_6003
PFAM: protein of unknown function DUF201; KEGG: met:M446_5779 hypothetical protein.
 
     0.801
Mnod_5997
TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase alpha subunit domain protein; KEGG: met:M446_5773 formylmethanofuran dehydrogenase subunit C.
 
     0.793
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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