Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mnod_5323KEGG: met:M446_5019 putative signal peptide. (179 aa)    
Predicted Functional Partners:
Mnod_5324
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: met:M446_5020 YVTN beta-propeller repeat-containing protein.
 
     0.964
Mnod_5322
PFAM: protein of unknown function DUF447; KEGG: met:M446_5018 hypothetical protein.
 
     0.923
Mnod_5321
PFAM: dihydropteroate synthase DHPS; KEGG: met:M446_5017 dihydropteroate synthase DhpS.
 
     0.909
Mnod_5318
KEGG: met:M446_5014 hypothetical protein.
 
     0.869
Mnod_5317
KEGG: met:M446_5013 hypothetical protein.
 
   
 0.861
Mnod_5986
KEGG: met:M446_5770 hypothetical protein.
 
   
 0.849
Mnod_1945
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: met:M446_0317 beta-ketoacyl synthase.
  
  
 0.824
Mnod_5316
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: met:M446_5012 YVTN beta-propeller repeat-containing protein.
 
     0.823
Mnod_5311
KEGG: met:M446_5007 hypothetical protein.
 
     0.799
Mnod_5312
PFAM: ABC-2 type transporter; KEGG: met:M446_5008 ABC-2 type transporter.
 
   
 0.791
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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