Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Mnod_5333PFAM: protein of unknown function DUF323; peptidase C14 caspase catalytic subunit p20; KEGG: met:M446_5032 hypothetical protein. (570 aa)    
Predicted Functional Partners:
Mnod_5334
KEGG: met:M446_5031 hypothetical protein.
 
     0.671
Mnod_5332
PFAM: glutathione peroxidase; KEGG: met:M446_5025 peroxiredoxin; Belongs to the glutathione peroxidase family.
     
 0.564
Mnod_3053
Serine/threonine protein kinase; PFAM: protein of unknown function RIO1; tyrosine protein kinase; protein of unknown function DUF323; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: met:M446_0913 serine/threonine protein kinase.
 
  
0.514
Mnod_0355
TIGRFAM: methyltransferase; KEGG: met:M446_2254 hypothetical protein.
  
  
 0.498
Mnod_3049
TIGRFAM: type VI secretion-associated protein, BMA_A0400 family; KEGG: bja:blr3602 hypothetical protein.
  
  
 0.478
Mnod_5336
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: met:M446_5030 peptidase C14 caspase catalytic subunit P20.
 
    
0.467
Mnod_3047
TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein; PFAM: OmpA/MotB domain protein; KEGG: bja:blr3600 hypothetical protein.
  
  
 0.459
Mnod_5293
PFAM: WD-40 repeat protein; cytochrome c class I; KEGG: met:M446_3100 cytochrome c class I.
 
  
 0.457
Mnod_1936
Endonuclease/exonuclease/phosphatase; PFAM: Hemolysin-type calcium-binding region; Endonuclease/exonuclease/phosphatase; KEGG: cyt:cce_3495 phytase.
  
  
 0.430
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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