Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_5336PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: met:M446_5030 peptidase C14 caspase catalytic subunit P20. (495 aa)    
Predicted Functional Partners:
Mnod_3053
Serine/threonine protein kinase; PFAM: protein of unknown function RIO1; tyrosine protein kinase; protein of unknown function DUF323; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: met:M446_0913 serine/threonine protein kinase.
     0.780
Mnod_5334
KEGG: met:M446_5031 hypothetical protein.
 
     0.585
Mnod_5335
Hypothetical protein.
       0.535
Mnod_5333
PFAM: protein of unknown function DUF323; peptidase C14 caspase catalytic subunit p20; KEGG: met:M446_5032 hypothetical protein.
 
    
0.467
Mnod_6186
PFAM: Sel1 domain protein repeat-containing protein; KEGG: mex:Mext_2279 Sel1 domain-containing protein.
      0.458
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.
       0.407
Mnod_5338
PFAM: protein of unknown function DUF1348; KEGG: met:M446_5027 hypothetical protein.
       0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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