Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_5364PFAM: glycosyl transferase group 1; KEGG: met:M446_5069 glycosyl transferase group 1. (432 aa)    
Predicted Functional Partners:
Mnod_1659
PFAM: ABC transporter related; KEGG: met:M446_0434 ABC transporter related.
 
 
 0.635
Mnod_1938
PFAM: polysaccharide export protein; KEGG: met:M446_0324 polysaccharide export protein.
 
  
 0.608
Mnod_7135
PFAM: polysaccharide export protein; KEGG: met:M446_6357 polysaccharide export protein.
 
  
 0.600
Mnod_1852
PFAM: lipopolysaccharide biosynthesis protein; KEGG: met:M446_4871 capsule polysaccharide export protein-like protein.
 
    0.575
Mnod_1939
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: met:M446_0323 capsule polysaccharide biosynthesis protein.
 
   
 0.568
Mnod_2049
KEGG: met:M446_6013 capsule polysaccharide export protein-like protein.
 
    0.552
Mnod_1658
KEGG: met:M446_6013 capsule polysaccharide export protein-like protein.
 
    0.534
Mnod_1941
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: met:M446_0321 capsule polysaccharide biosynthesis protein.
 
    0.524
Mnod_5363
PFAM: Rhodanese domain protein; KEGG: met:M446_5070 rhodanese domain-containing protein.
       0.500
Mnod_1654
PFAM: ABC-2 type transporter; KEGG: met:M446_3810 ABC-2 type transporter.
 
  
 0.493
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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