STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5367PFAM: Sel1 domain protein repeat-containing protein; KEGG: met:M446_5057 Sel1 domain-containing protein. (290 aa)    
Predicted Functional Partners:
ilvD-2
TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: met:M446_5056 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.853
Mnod_5289
PFAM: Sel1 domain protein repeat-containing protein; KEGG: met:M446_3098 Sel1 domain-containing protein.
  
     0.771
Mnod_5537
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: met:M446_5154 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
 
 0.720
Mnod_7208
KEGG: met:M446_6292 hypothetical protein.
  
     0.636
Mnod_0172
KEGG: met:M446_4587 hypothetical protein.
  
     0.618
Mnod_6604
KEGG: met:M446_6067 hypothetical protein.
  
     0.607
Mnod_3620
TIGRFAM: flagellar export protein FliJ; KEGG: met:M446_3948 flagellar export protein FliJ.
  
     0.606
Mnod_5434
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: met:M446_0226 integral membrane sensor signal transduction histidine kinase.
  
 
 
 0.606
Mnod_7506
KEGG: met:M446_6759 hypothetical protein.
  
     0.594
Mnod_7582
KEGG: met:M446_6846 hypothetical protein.
 
     0.593
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.