Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Mnod_5389Hypothetical protein; KEGG: nmu:Nmul_A1222 von Willebrand factor, type A. (598 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.935
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.905
Mnod_5390
PFAM: protein of unknown function DUF1508; KEGG: hma:rrnAC1613 hypothetical protein.
       0.773
Mnod_0221
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: met:M446_3163 peptidylprolyl isomerase FKBP-type.
   
 
 0.771
Mnod_6026
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: met:M446_5803 membrane protein involved in aromatic hydrocarbon degradation.
    
   0.689
Mnod_7079
PFAM: SmpA/OmlA domain protein; KEGG: met:M446_6226 SmpA/OmlA domain-containing protein.
    
 
 0.662
Mnod_1532
KEGG: met:M446_0637 membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein.
   
    0.590
Mnod_2124
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: met:M446_5680 PpiC-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.547
Mnod_4009
PFAM: NifZ family protein; KEGG: met:M446_3599 NifZ family protein.
   
 
 0.547
Mnod_4640
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: met:M446_2587 PpiC-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.547
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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