STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5973KEGG: met:M446_5748 putative ABC transporter periplasmic solute-binding protein. (324 aa)    
Predicted Functional Partners:
Mnod_5974
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: met:M446_5749 binding-protein-dependent transport systems inner membrane component.
 
  
 0.918
Mnod_5315
KEGG: met:M446_5011 hypothetical protein.
 
  
 0.807
Mnod_5316
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: met:M446_5012 YVTN beta-propeller repeat-containing protein.
 
    0.807
Mnod_5976
PFAM: beta-lactamase domain protein; KEGG: met:M446_5751 beta-lactamase domain-containing protein.
 
     0.801
Mnod_5312
PFAM: ABC-2 type transporter; KEGG: met:M446_5008 ABC-2 type transporter.
 
     0.795
Mnod_5317
KEGG: met:M446_5013 hypothetical protein.
 
    0.783
Mnod_5324
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: met:M446_5020 YVTN beta-propeller repeat-containing protein.
 
    0.781
Mnod_5975
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: met:M446_5750 ABC transporter related.
 
  
 0.778
Mnod_5984
PFAM: Sulphur oxidation protein SoxZ; KEGG: met:M446_5759 sulphur oxidation protein SoxZ.
 
    0.774
Mnod_0421
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: met:M446_2082 methanol/ethanol family PQQ-dependent dehydrogenase.
 
   
 0.766
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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