STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_5978KEGG: met:M446_5753 hypothetical protein. (203 aa)    
Predicted Functional Partners:
Mnod_5979
PFAM: extracellular solute-binding protein family 3; KEGG: met:M446_5754 extracellular solute-binding protein.
 
  
 0.967
Mnod_5980
KEGG: met:M446_5755 hypothetical protein.
 
   
 0.954
Mnod_5977
TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: Pyrrolo-quinoline quinone; KEGG: met:M446_5752 methanol/ethanol family PQQ-dependent dehydrogenase.
 
  
 0.897
Mnod_2347
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: met:M446_2991 cytochrome c oxidase, subunit II.
  
 
 0.887
Mnod_7537
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.881
Mnod_7536
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.878
Mnod_6893
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_5824 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
 
 0.868
Mnod_5316
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: met:M446_5012 YVTN beta-propeller repeat-containing protein.
 
 
 0.858
Mnod_5324
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: met:M446_5020 YVTN beta-propeller repeat-containing protein.
 
 
 0.856
Mnod_6886
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; KEGG: met:M446_5817 cytochrome c oxidase, subunit II.
  
 
 0.856
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.