STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mnod_6080PFAM: glycoside hydrolase family 25; KEGG: met:M446_5362 glycoside hydrolase family protein. (282 aa)    
Predicted Functional Partners:
Mnod_6079
Ribonuclease HII/HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.773
Mnod_6077
KEGG: met:M446_5365 hypothetical protein.
       0.605
Mnod_6078
PFAM: AMP-dependent synthetase and ligase; KEGG: met:M446_5364 AMP-dependent synthetase and ligase.
       0.605
Mnod_6081
PFAM: protein of unknown function DUF1130; KEGG: met:M446_5361 hypothetical protein.
       0.557
Mnod_7180
PFAM: Invasion associated locus B family protein; KEGG: met:M446_6313 invasion associated locus B family protein.
  
     0.556
Mnod_1173
PFAM: lipolytic protein G-D-S-L family; protein of unknown function DUF459; KEGG: met:M446_1808 hypothetical protein.
  
     0.432
Mnod_4435
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: met:M446_3388 protein TolA.
  
   
 0.419
Mnod_1064
PFAM: conserved hypothetical protein; KEGG: met:M446_2096 hypothetical protein.
  
     0.401
Mnod_5194
KEGG: met:M446_4458 hypothetical protein.
  
     0.400
Your Current Organism:
Methylobacterium nodulans
NCBI taxonomy Id: 460265
Other names: M. nodulans ORS 2060, Methylobacterium nodulans ORS 2060, Methylobacterium nodulans str. ORS 2060, Methylobacterium nodulans strain ORS 2060
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