STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SES93314.1Hypothetical protein. (293 aa)    
Predicted Functional Partners:
SES93296.1
TRAP transporter, 4TM/12TM fusion protein.
       0.782
SES93196.1
2-methylcitrate dehydratase PrpD.
 
     0.630
SES93250.1
Hypothetical protein.
       0.586
SET31157.1
Zn-dependent amino-or carboxypeptidase, M28 family.
 
    0.576
SET63830.1
4-oxalomesaconate hydratase.
 
  
 0.536
SES93225.1
Nickel-dependent lactate racemase.
       0.508
SEU17919.1
Sugar phosphate isomerase/epimerase.
  
     0.490
SEU02115.1
Sugar phosphate isomerase/epimerase.
  
     0.482
SET63803.1
Regulator of RNase E activity RraA.
 
     0.448
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.437
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.