STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET19478.1ABC-type multidrug transport system, ATPase and permease component. (551 aa)    
Predicted Functional Partners:
SET97765.1
Molecular chaperone DnaK (HSP70); Belongs to the heat shock protein 70 family.
  
 
 0.741
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.694
SEU16753.1
Molecular chaperone HscC; Belongs to the heat shock protein 70 family.
  
 
 0.664
SET71969.1
NitT/TauT family transport system ATP-binding protein.
  
     0.657
SEU05692.1
ABC-2 type transport system ATP-binding protein.
 
 0.642
SET39249.1
Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
 
 
 0.639
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 
 0.638
SEU01692.1
ATPase family associated with various cellular activities (AAA).
   
 0.603
SES93666.1
Molecular chaperone HscC; Belongs to the heat shock protein 70 family.
  
 
 0.597
SET53998.1
Helix-turn-helix; Belongs to the AAA ATPase family.
 
   
 0.592
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.