STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufCFe-S cluster assembly ATP-binding protein. (248 aa)    
Predicted Functional Partners:
sufB
Fe-S cluster assembly protein SufB.
 0.999
SET28245.1
Uncharacterized protein family (UPF0051).
 
 0.996
SET22474.1
Uncharacterized protein family (UPF0051).
 
 0.981
SEU13637.1
Uncharacterized protein family (UPF0051).
 
 0.980
SET28215.1
Cysteine desulfurase / selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.979
SET28194.1
Nitrogen fixation protein NifU.
 
 
 0.978
SET84454.1
Cysteine desulfurase / selenocysteine lyase.
 
 
 0.957
SET30459.1
L-cysteine/cystine lyase.
 
 
 0.955
SEU15055.1
Cysteine desulfurase family protein.
 
 
 0.877
nifU
Nitrogen fixation protein NifU.
  
 
 0.829
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.