STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET28792.1Multiple sugar transport system permease protein. (285 aa)    
Predicted Functional Partners:
SET28825.1
Multiple sugar transport system permease protein.
 
 0.978
SET28852.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
 0.975
SET74263.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.937
SEU21037.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
 0.936
SEU18022.1
Oligogalacturonide transport system substrate-binding protein.
 
 0.929
SET94366.1
Oligogalacturonide transport system permease protein.
 
 0.923
SEU18085.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.923
SEU21043.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
 0.923
SET94353.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
 0.920
SET45590.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 0.919
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.