STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET60370.1Transcriptional regulator PadR-like family protein. (175 aa)    
Predicted Functional Partners:
SET60394.1
Putative efflux protein, MATE family.
 
    0.733
SET81215.1
Protein of unknown function.
 
   
 0.687
SET42744.1
Transcriptional regulator, TetR family.
  
   
 0.640
SET60346.1
ABC-2 type transport system ATP-binding protein.
  
  
 0.628
SET60326.1
ABC-2 type transport system permease protein.
 
   
 0.616
SET28074.1
ABC-type transport system, involved in lipoprotein release, permease component.
 
   
 0.591
SET84290.1
AraC-type DNA-binding protein.
  
    0.533
SEU03531.1
Putative ABC transport system permease protein.
 
   
 0.521
SET45892.1
AraC-type DNA-binding protein.
  
    0.520
SET95723.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.505
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.