STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET87273.1Transketolase. (308 aa)    
Predicted Functional Partners:
SET87256.1
Transketolase.
 0.999
SET32597.1
Transketolase.
 0.998
SEU14448.1
Transketolase.
 0.998
SEU14120.1
Transketolase.
 0.998
nifJ
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
 
 0.917
SES97713.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.901
SET32054.1
Ribulose-phosphate 3-epimerase.
 
 
 0.851
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
0.836
SET53776.1
Ribose 5-phosphate isomerase B.
  
 
 0.828
SET86957.1
Ribose 5-phosphate isomerase B.
  
 
 0.828
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.