STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET94444.1Helix-turn-helix domain-containing protein. (245 aa)    
Predicted Functional Partners:
SET80891.1
Response regulator receiver domain-containing protein.
   
 0.909
SEU05933.1
Signal transduction histidine kinase.
 
 
 0.905
SET00264.1
PAS domain S-box-containing protein.
 
 
 0.903
SET45773.1
PAS domain S-box-containing protein.
 
 
 0.902
SET60305.1
PAS domain S-box-containing protein.
 
 
 0.895
SET45734.1
PAS domain S-box-containing protein.
 
 
0.889
SET54173.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.859
SET03113.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  
 0.846
SES96713.1
Signal transduction histidine kinase.
 
  
 0.832
SET98551.1
Signal transduction histidine kinase.
 
 
 0.829
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.