STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEU01770.1Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains. (271 aa)    
Predicted Functional Partners:
SET28520.1
Histidine kinase.
 
  
  0.850
SET61214.1
Two-component system, sensor histidine kinase YesM.
 
  
  0.840
SET23583.1
Two-component system, LytT family, sensor histidine kinase LytS.
 
  
  0.839
SEU12321.1
HAMP domain-containing protein.
 
  
  0.825
SET83456.1
Two component transcriptional regulator, LytTR family.
  
  
  0.821
SEU17433.1
HAMP domain-containing protein.
 
  
  0.817
SET89514.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
  0.816
SET00844.1
Two component transcriptional regulator, LytTR family.
  
  
  0.810
SET54173.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
  0.809
SEU16966.1
Two component transcriptional regulator, LytTR family.
  
  
  0.804
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.