STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEU01828.1Hypothetical protein. (914 aa)    
Predicted Functional Partners:
SEU01839.1
LysM domain-containing protein.
       0.682
SEU01815.1
Hypothetical protein.
       0.561
SET48524.1
Hypothetical protein.
  
     0.559
SEU01852.1
Phage protein D.
       0.542
SEU01870.1
Hypothetical protein.
       0.542
SEU10886.1
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
  
     0.537
SEU10549.1
Serine protease inhibitor; Belongs to the serpin family.
  
     0.531
SEU01883.1
Hypothetical protein.
       0.528
SEU01801.1
Conserved hypothetical phage tail region protein.
       0.505
SET65976.1
Serpin B; Belongs to the serpin family.
  
     0.490
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.