STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEU09020.1Predicted TIM-barrel enzyme. (277 aa)    
Predicted Functional Partners:
SEU09034.1
Uncharacterized protein, UPF0261 family.
  
 0.998
SET95310.1
Uncharacterized protein, UPF0261 family.
  
 0.994
SET64292.1
Uncharacterized protein, contains a NRPS condensation (elongation) domain.
  
  
 0.751
SET88066.1
Hypothetical protein.
  
  
 0.751
SEU13857.1
Protein of unknown function.
   
    0.675
SEU09046.1
Mannose ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family.
       0.641
SEU09060.1
Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.641
SET48625.1
Hypothetical protein.
   
    0.620
SEU09071.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
       0.616
SEU15135.1
isopenicillin-N N-acyltransferase like protein.
  
     0.585
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.