STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEU17015.1AAA-like domain-containing protein. (969 aa)    
Predicted Functional Partners:
SEU16988.1
Type IV secretory system Conjugative DNA transfer.
 
  
 0.901
SET35656.1
Pilus assembly protein CpaF.
 
  
 0.786
SEU17009.1
Hypothetical protein.
       0.748
SET78454.1
Type IV secretion system protein VirD4.
 
  
 0.738
SEU21932.1
Type IV secretion system protein VirD4.
 
  
 0.737
SET35058.1
Type IV secretion system protein VirD4.
 
  
 0.706
SET35915.1
Hypothetical protein.
 
    0.685
SET97274.1
Type IV secretory system Conjugative DNA transfer.
 
  
 0.682
SEU05533.1
Type IV secretory system Conjugative DNA transfer.
 
  
 0.620
SEU16996.1
Hypothetical protein.
  
    0.604
Your Current Organism:
Clostridium lavalense
NCBI taxonomy Id: 460384
Other names: CCUG 54291, Clostridium lavalense Domingo et al. 2009, JCM 14986, NML 03-A-015, [. lavalense, [Clostridium] lavalense, strain CCRI-9842
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.