Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEU22014.1 | SEU22019.1 | SAMN05216313_1666 | SAMN05216313_1667 | Hypothetical protein. | Ribosomal protein L7Ae. | 0.977 |
SEU22014.1 | infB | SAMN05216313_1666 | SAMN05216313_1668 | Hypothetical protein. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.970 |
SEU22014.1 | nusA | SAMN05216313_1666 | SAMN05216313_1665 | Hypothetical protein. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.949 |
SEU22014.1 | rbfA | SAMN05216313_1666 | SAMN05216313_1669 | Hypothetical protein. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.910 |
SEU22014.1 | rimP | SAMN05216313_1666 | SAMN05216313_1664 | Hypothetical protein. | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.936 |
SEU22014.1 | rpsB | SAMN05216313_1666 | SAMN05216313_101222 | Hypothetical protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.655 |
SEU22014.1 | rpsG | SAMN05216313_1666 | SAMN05216313_1754 | Hypothetical protein. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.612 |
SEU22014.1 | rpsJ | SAMN05216313_1666 | SAMN05216313_11855 | Hypothetical protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.529 |
SEU22014.1 | rpsL | SAMN05216313_1666 | SAMN05216313_1753 | Hypothetical protein. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.734 |
SEU22019.1 | SEU22014.1 | SAMN05216313_1667 | SAMN05216313_1666 | Ribosomal protein L7Ae. | Hypothetical protein. | 0.977 |
SEU22019.1 | infB | SAMN05216313_1667 | SAMN05216313_1668 | Ribosomal protein L7Ae. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.997 |
SEU22019.1 | nusA | SAMN05216313_1667 | SAMN05216313_1665 | Ribosomal protein L7Ae. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.965 |
SEU22019.1 | rbfA | SAMN05216313_1667 | SAMN05216313_1669 | Ribosomal protein L7Ae. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.772 |
SEU22019.1 | rimP | SAMN05216313_1667 | SAMN05216313_1664 | Ribosomal protein L7Ae. | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.936 |
SEU22019.1 | rpsB | SAMN05216313_1667 | SAMN05216313_101222 | Ribosomal protein L7Ae. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
SEU22019.1 | rpsG | SAMN05216313_1667 | SAMN05216313_1754 | Ribosomal protein L7Ae. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.999 |
SEU22019.1 | rpsJ | SAMN05216313_1667 | SAMN05216313_11855 | Ribosomal protein L7Ae. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
SEU22019.1 | rpsL | SAMN05216313_1667 | SAMN05216313_1753 | Ribosomal protein L7Ae. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
SEU22019.1 | rsmA | SAMN05216313_1667 | SAMN05216313_117108 | Ribosomal protein L7Ae. | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.924 |
infB | SEU22014.1 | SAMN05216313_1668 | SAMN05216313_1666 | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Hypothetical protein. | 0.970 |
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