STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_07572Zinc finger CCCH-type with G patch domain-containing protein. (632 aa)    
Predicted Functional Partners:
ACMD2_06672
116 kDa U5 small nuclear ribonucleoprotein component.
   
 
 0.914
ACMD2_05769
U2 small nuclear ribonucleoprotein A.
    
 
 0.909
ACMD2_02447
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.905
ACMD2_02441
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.905
ACMD2_20487
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.905
ACMD2_01689
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.905
ACMD2_05827
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.905
ACMD2_09862
Pre-mRNA-processing factor 17.
   
 0.902
ACMD2_25470
WD repeat-containing protein 25.
   
 0.902
ACMD2_16500
Pre-mRNA-processing-splicing factor 8.
    
 
 0.901
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.