ACMD2_25679 protein (Ananas comosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Ananas comosus

NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACMD2_01126	ACMD2_03011	A0A199VVF3	A0A199ULP3	E3 ubiquitin-protein ligase RKP.	DNA-directed RNA polymerase subunit 10-like protein.	0.690
ACMD2_01126	ACMD2_04423	A0A199VVF3	A0A199UUU1	E3 ubiquitin-protein ligase RKP.	DNA-directed RNA polymerases II, IV and V subunit 8B; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.688
ACMD2_01126	ACMD2_06680	A0A199VVF3	A0A199US40	E3 ubiquitin-protein ligase RKP.	Heterogeneous nuclear ribonucleoprotein F.	0.960
ACMD2_01126	ACMD2_07834	A0A199VVF3	A0A199VPE9	E3 ubiquitin-protein ligase RKP.	DNA-directed RNA polymerases II, IV and V subunit 6A.	0.733
ACMD2_01126	ACMD2_09324	A0A199VVF3	A0A199VCG5	E3 ubiquitin-protein ligase RKP.	Transcription initiation factor IIF subunit beta.	0.692
ACMD2_01126	ACMD2_11168	A0A199VVF3	A0A199USK6	E3 ubiquitin-protein ligase RKP.	Serine/arginine-rich splicing factor SC35.	0.770
ACMD2_01126	ACMD2_11262	A0A199VVF3	A0A199V2B7	E3 ubiquitin-protein ligase RKP.	Nuclear cap-binding protein subunit 1.	0.900
ACMD2_01126	ACMD2_11416	A0A199VVF3	A0A199ULP9	E3 ubiquitin-protein ligase RKP.	DNA-directed RNA polymerase II subunit 4.	0.680
ACMD2_01126	ACMD2_18917	A0A199VVF3	A0A199UME0	E3 ubiquitin-protein ligase RKP.	DNA-directed RNA polymerases II, IV and V subunit 3.	0.725
ACMD2_01126	ACMD2_25679	A0A199VVF3	A0A199UFF0	E3 ubiquitin-protein ligase RKP.	Uncharacterized protein.	0.777
ACMD2_03011	ACMD2_01126	A0A199ULP3	A0A199VVF3	DNA-directed RNA polymerase subunit 10-like protein.	E3 ubiquitin-protein ligase RKP.	0.690
ACMD2_03011	ACMD2_04423	A0A199ULP3	A0A199UUU1	DNA-directed RNA polymerase subunit 10-like protein.	DNA-directed RNA polymerases II, IV and V subunit 8B; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.998
ACMD2_03011	ACMD2_06680	A0A199ULP3	A0A199US40	DNA-directed RNA polymerase subunit 10-like protein.	Heterogeneous nuclear ribonucleoprotein F.	0.702
ACMD2_03011	ACMD2_07834	A0A199ULP3	A0A199VPE9	DNA-directed RNA polymerase subunit 10-like protein.	DNA-directed RNA polymerases II, IV and V subunit 6A.	0.999
ACMD2_03011	ACMD2_09324	A0A199ULP3	A0A199VCG5	DNA-directed RNA polymerase subunit 10-like protein.	Transcription initiation factor IIF subunit beta.	0.963
ACMD2_03011	ACMD2_11168	A0A199ULP3	A0A199USK6	DNA-directed RNA polymerase subunit 10-like protein.	Serine/arginine-rich splicing factor SC35.	0.752
ACMD2_03011	ACMD2_11262	A0A199ULP3	A0A199V2B7	DNA-directed RNA polymerase subunit 10-like protein.	Nuclear cap-binding protein subunit 1.	0.692
ACMD2_03011	ACMD2_11416	A0A199ULP3	A0A199ULP9	DNA-directed RNA polymerase subunit 10-like protein.	DNA-directed RNA polymerase II subunit 4.	0.996
ACMD2_03011	ACMD2_18917	A0A199ULP3	A0A199UME0	DNA-directed RNA polymerase subunit 10-like protein.	DNA-directed RNA polymerases II, IV and V subunit 3.	0.999
ACMD2_03011	ACMD2_25679	A0A199ULP3	A0A199UFF0	DNA-directed RNA polymerase subunit 10-like protein.	Uncharacterized protein.	0.686