Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_15656F-box/LRR-repeat protein 4. (592 aa)    
Predicted Functional Partners:
ACMD2_06142
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
     
 0.656
ACMD2_24598
DNA repair protein RAD16.
      
 0.641
ACMD2_00153
Membrane-anchored ubiquitin-fold protein; May serve as docking site to facilitate the association of other proteins to the plasma membrane.
      
 0.629
ACMD2_19389
Ubiquitin-conjugating enzyme E2 variant 1B.
      
 0.609
ACMD2_05239
Membrane-anchored ubiquitin-fold protein 1.
      
 0.518
ACMD2_09473
Membrane-anchored ubiquitin-fold protein 1.
      
 0.518
ACMD2_18344
Protein FRA10AC1.
      
 0.516
ACMD2_12781
Membrane-anchored ubiquitin-fold protein; May serve as docking site to facilitate the association of other proteins to the plasma membrane.
      
 0.513
ACMD2_24718
Membrane-anchored ubiquitin-fold protein 4.
      
 0.513
ACMD2_21494
Uncharacterized protein.
  
 
  0.434
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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