STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_20070Uncharacterized protein. (215 aa)    
Predicted Functional Partners:
ACMD2_01004
Trafficking protein particle complex II-specific subunit 1.
  
     0.470
ACMD2_26927
Ribosomal_L9_C domain-containing protein.
  
     0.462
ACMD2_19337
Phospholipase D zeta 1.
  
     0.439
ACMD2_03098
DNA-directed primase/polymerase protein.
  
     0.436
ACMD2_01249
Protein EFR.
  
     0.427
ACMD2_02987
Transcriptional corepressor SEUSS.
  
     0.415
ACMD2_00276
PCI domain-containing protein.
  
     0.407
ACMD2_12522
Pentatricopeptide repeat-containing protein, chloroplastic.
  
     0.402
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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