Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACMD2_06923LIMR family protein. (492 aa)    
Predicted Functional Partners:
ACMD2_04805
ABC transporter D family member 2, chloroplastic.
    
 0.823
ACMD2_18554
ABC transporter D family member 1.
    
 0.823
ACMD2_21717
ABC transporter D family member 1.
    
 0.823
ACMD2_21718
ABC transporter D family member 1.
    
 0.823
ACMD2_03149
Binding partner of ACD11 1.
      
 0.520
ACMD2_03767
Phospholipid--sterol O-acyltransferase.
      
 0.515
ACMD2_02530
Putative plant SNARE 13.
  
     0.471
ACMD2_15062
Syntaxin-71.
  
     0.446
ACMD2_24793
Uncharacterized protein.
      
 0.420
ACMD2_25957
CASP-like protein 5A1.
      
 0.420
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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