STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_18944Uncharacterized protein. (124 aa)    
Predicted Functional Partners:
ACMD2_06680
Heterogeneous nuclear ribonucleoprotein F.
   
 0.709
ACMD2_01126
E3 ubiquitin-protein ligase RKP.
   
 0.699
ACMD2_11262
Nuclear cap-binding protein subunit 1.
   
  0.632
ACMD2_18917
DNA-directed RNA polymerases II, IV and V subunit 3.
    
 0.607
ACMD2_07587
DNA-directed RNA polymerases II, IV and V subunit 12.
   
 
  0.595
ACMD2_03011
DNA-directed RNA polymerase subunit 10-like protein.
   
 
  0.590
ACMD2_13802
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
   
   0.555
ACMD2_25679
Uncharacterized protein.
   
 0.542
ACMD2_03268
Polypyrimidine tract-binding protein.
   
 0.542
ACMD2_01561
Polypyrimidine tract-binding protein.
   
 0.542
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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