Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACMD2_15928Transcription factor PIF3. (603 aa)    
Predicted Functional Partners:
ACMD2_08827
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
    
 0.987
ACMD2_05813
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
    
 0.986
ACMD2_16179
DELLA protein GAI; Belongs to the GRAS family.
    
 0.950
ACMD2_22287
DELLA protein DWARF8; Belongs to the GRAS family.
    
 0.919
ACMD2_16790
DELLA protein DWARF8; Belongs to the GRAS family.
    
 0.919
ACMD2_04142
E3 ubiquitin-protein ligase COP1.
    
 
 0.881
ACMD2_13477
Transcription factor UNE10.
     
  0.855
ACMD2_05155
Transcription factor HY5.
    
 
 0.790
ACMD2_10361
Two-component response regulator-like APRR1.
    
 
 0.774
ACMD2_20940
Two-component response regulator-like PRR1.
    
 
 0.774
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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