Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_16486RING-H2 zinc finger protein RHA1a. (202 aa)    
Predicted Functional Partners:
ACMD2_08200
BTB/POZ domain-containing protein; Belongs to the NPH3 family.
      
 0.415
ACMD2_14345
Putative ubiquitin-conjugating enzyme E2 23.
    
 0.400
ACMD2_25823
Putative ubiquitin-conjugating enzyme E2 23.
    
 0.400
ACMD2_11988
Putative ubiquitin-conjugating enzyme E2 23.
    
 0.400
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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