Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_16492Homeobox protein knotted-1-like 3. (330 aa)    
Predicted Functional Partners:
ACMD2_09308
BEL1-like homeodomain protein 6.
  
 
 
0.692
ACMD2_05712
BEL1-like homeodomain protein 7.
    
 
 0.641
ACMD2_19545
Homeobox protein knotted-1-like 6.
  
 
 
0.597
ACMD2_07162
BEL1-like homeodomain protein 1.
  
 
 
0.574
ACMD2_21894
Protein CUP-SHAPED COTYLEDON 2.
      
 0.568
ACMD2_24892
Homeobox protein knotted-1-like 2.
    
 
 0.544
ACMD2_22582
Homeobox protein knotted-1-like 6.
    
 
 0.544
ACMD2_08187
Homeobox protein knotted-1-like 2.
    
 
 0.544
ACMD2_04659
Homeobox protein knotted-1-like 2.
    
 
 0.544
ACMD2_18180
Flowering time control protein FPA.
      
 0.516
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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