Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_19725Expansin-like A1; Belongs to the expansin family. (264 aa)    
Predicted Functional Partners:
ACMD2_09433
Ankyrin-3.
   
  0.699
ACMD2_22100
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
   
 0.630
ACMD2_08991
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.
   
 0.630
ACMD2_09066
Polyubiquitin-J.
    
  0.612
ACMD2_27469
Copper transporter 6.
  
   
 0.585
ACMD2_14842
Long-chain-alcohol oxidase; Long-chain fatty alcohol oxidase involved in the omega- oxidation pathway of lipid degradation.
    
 
 0.547
ACMD2_08116
Scarecrow-like protein 15; Belongs to the GRAS family.
    
 
 0.545
ACMD2_06251
Photosynthetic NDH subunit of subcomplex B 2, chloroplastic.
  
 
   0.543
ACMD2_15262
Uncharacterized protein.
  
 
  0.537
ACMD2_11867
Photosystem I reaction center subunit XI, chloroplastic.
      
 0.536
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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