ACMD2_12948 protein (Ananas comosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ACMD2_12948

Protein CHUP1, chloroplastic. (800 aa)

Predicted Functional Partners:

ACMD2_09433

0.699

ACMD2_22100

0.630

ACMD2_08991

0.630

ACMD2_00006

0.523

ACMD2_13471

0.503

ACMD2_09843

0.502

ACMD2_22148

0.475

ACMD2_02487

0.465

ACMD2_05236

0.455

ACMD2_01876

0.455

Your Current Organism:

Ananas comosus

NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACMD2_00006	ACMD2_12948	A0A199VPS7	A0A199UI54	Putative oxidoreductase YgbJ.	Protein CHUP1, chloroplastic.	0.523
ACMD2_01876	ACMD2_02487	A0A199VE42	A0A199V8Z5	Protein EARLY FLOWERING 3.	Uncharacterized protein.	0.452
ACMD2_01876	ACMD2_08991	A0A199VE42	A0A199V903	Protein EARLY FLOWERING 3.	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	0.760
ACMD2_01876	ACMD2_09433	A0A199VE42	A0A199W6J1	Protein EARLY FLOWERING 3.	Ankyrin-3.	0.823
ACMD2_01876	ACMD2_09843	A0A199VE42	A0A199VLD1	Protein EARLY FLOWERING 3.	Uncharacterized protein.	0.510
ACMD2_01876	ACMD2_12948	A0A199VE42	A0A199UI54	Protein EARLY FLOWERING 3.	Protein CHUP1, chloroplastic.	0.455
ACMD2_01876	ACMD2_22100	A0A199VE42	A0A199V352	Protein EARLY FLOWERING 3.	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	0.760
ACMD2_01876	ACMD2_22148	A0A199VE42	A0A199VJF1	Protein EARLY FLOWERING 3.	UBA domain-containing protein.	0.704
ACMD2_02487	ACMD2_01876	A0A199V8Z5	A0A199VE42	Uncharacterized protein.	Protein EARLY FLOWERING 3.	0.452
ACMD2_02487	ACMD2_05236	A0A199V8Z5	A0A199US53	Uncharacterized protein.	S phase cyclin A-associated protein in the endoplasmic reticulum.	0.512
ACMD2_02487	ACMD2_08991	A0A199V8Z5	A0A199V903	Uncharacterized protein.	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	0.650
ACMD2_02487	ACMD2_09433	A0A199V8Z5	A0A199W6J1	Uncharacterized protein.	Ankyrin-3.	0.958
ACMD2_02487	ACMD2_09843	A0A199V8Z5	A0A199VLD1	Uncharacterized protein.	Uncharacterized protein.	0.422
ACMD2_02487	ACMD2_12948	A0A199V8Z5	A0A199UI54	Uncharacterized protein.	Protein CHUP1, chloroplastic.	0.465
ACMD2_02487	ACMD2_13471	A0A199V8Z5	A0A199UTC6	Uncharacterized protein.	Zinc finger protein ZAT2.	0.532
ACMD2_02487	ACMD2_22100	A0A199V8Z5	A0A199V352	Uncharacterized protein.	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	0.650
ACMD2_05236	ACMD2_02487	A0A199US53	A0A199V8Z5	S phase cyclin A-associated protein in the endoplasmic reticulum.	Uncharacterized protein.	0.512
ACMD2_05236	ACMD2_12948	A0A199US53	A0A199UI54	S phase cyclin A-associated protein in the endoplasmic reticulum.	Protein CHUP1, chloroplastic.	0.455
ACMD2_05236	ACMD2_13471	A0A199US53	A0A199UTC6	S phase cyclin A-associated protein in the endoplasmic reticulum.	Zinc finger protein ZAT2.	0.491
ACMD2_08991	ACMD2_01876	A0A199V903	A0A199VE42	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein.	Protein EARLY FLOWERING 3.	0.760