STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_01979F-box/FBD/LRR-repeat protein. (437 aa)    
Predicted Functional Partners:
ACMD2_13574
Putative cyclic nucleotide-gated ion channel 17.
   
 
  0.626
ACMD2_15006
Putative cyclic nucleotide-gated ion channel 19.
   
 
  0.520
ACMD2_04818
Cyclic nucleotide-gated ion channel 1.
   
 
  0.520
ACMD2_23652
Putative cyclic nucleotide-gated ion channel 20, chloroplastic.
   
 
  0.520
ACMD2_01962
Putative cyclic nucleotide-gated ion channel 6.
   
 
  0.510
ACMD2_24518
Mitogen-activated protein kinase kinase kinase 1; Belongs to the protein kinase superfamily.
    
  0.422
ACMD2_15756
Mitogen-activated protein kinase kinase kinase 1.
    
  0.422
ACMD2_17804
Mitogen-activated protein kinase kinase kinase 1.
    
  0.422
ACMD2_26352
Mitogen-activated protein kinase kinase kinase 1.
    
  0.422
ACMD2_07705
Cyclic nucleotide-gated ion channel 4.
   
 
  0.404
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.