Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_01938PHD finger protein ING1. (144 aa)    
Predicted Functional Partners:
ACMD2_09382
Lysine-specific demethylase PHF2.
    
 
 0.663
ACMD2_10497
Carboxymethylenebutenolidase.
      
 0.651
ACMD2_07192
Protein usf.
      
 0.638
ACMD2_07187
Protein usf.
      
 0.638
ACMD2_15324
Chromatin modification-related protein MEAF6.
    
 0.600
ACMD2_04499
SWR1-complex protein 4.
    
 0.536
ACMD2_02382
Enhancer of polycomb-like protein.
    
 0.530
ACMD2_17158
Cysteine proteinase inhibitor 5; Belongs to the cystatin family.
      
 0.516
ACMD2_13039
Cysteine proteinase inhibitor 5; Belongs to the cystatin family.
      
 0.516
ACMD2_18661
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.509
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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