Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_04358Scarecrow-like protein 23; Belongs to the GRAS family. (436 aa)    
Predicted Functional Partners:
ACMD2_14098
Protein SHORT-ROOT 1; Belongs to the GRAS family.
  
 
 
 0.846
ACMD2_18950
Protein SHORT-ROOT 1; Belongs to the GRAS family.
  
 
 
0.785
ACMD2_12436
Ubiquitin carboxyl-terminal hydrolase 20.
      
 0.626
ACMD2_15380
Cyclin-dependent kinase B1-1; Belongs to the protein kinase superfamily.
      
 0.612
ACMD2_18591
Putative scarecrow-like protein 16; Belongs to the GRAS family.
  
   
 0.598
ACMD2_05263
Cyclin-D6-1; Belongs to the cyclin family.
      
 0.591
ACMD2_25883
GDSL esterase/lipase.
  
     0.534
ACMD2_22352
T-complex protein 1 subunit gamma; Belongs to the TCP-1 chaperonin family.
      
 0.533
ACMD2_26892
Germin-like protein 8-3.
  
     0.530
ACMD2_09989
Homeobox-leucine zipper protein ROC5.
      
 0.530
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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