STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_04387DNA-directed RNA polymerase III subunit RPC5. (330 aa)    
Predicted Functional Partners:
ACMD2_05284
DNA-directed RNA polymerases I and III subunit RPAC2.
   
 0.996
ACMD2_04400
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.994
ACMD2_11287
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.994
ACMD2_07834
DNA-directed RNA polymerases II, IV and V subunit 6A.
   
 0.992
ACMD2_13969
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.991
ACMD2_04423
DNA-directed RNA polymerases II, IV and V subunit 8B; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.991
ACMD2_17788
Uncharacterized protein.
   
 0.990
ACMD2_07587
DNA-directed RNA polymerases II, IV and V subunit 12.
   
 0.986
ACMD2_03011
DNA-directed RNA polymerase subunit 10-like protein.
   
 0.986
ACMD2_02249
DNA-directed RNA polymerase III subunit RPC9.
   
 0.986
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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