Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACMD2_04387DNA-directed RNA polymerase III subunit RPC5. (330 aa)    
Predicted Functional Partners:
ACMD2_05284
DNA-directed RNA polymerases I and III subunit RPAC2.
   
 0.995
ACMD2_17788
Uncharacterized protein.
   
 0.993
ACMD2_02249
DNA-directed RNA polymerase III subunit RPC9.
   
 0.990
ACMD2_07834
DNA-directed RNA polymerases II, IV and V subunit 6A.
   
 0.988
ACMD2_07587
DNA-directed RNA polymerases II, IV and V subunit 12.
   
 0.987
ACMD2_03011
DNA-directed RNA polymerase subunit 10-like protein.
   
 0.987
ACMD2_04423
DNA-directed RNA polymerases II, IV and V subunit 8B; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.985
ACMD2_19724
DNA-directed RNA polymerase III subunit rpc8.
   
 0.981
ACMD2_20878
DNA-directed RNA polymerase III subunit rpc8.
   
 0.981
ACMD2_04400
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.980
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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