Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_04384Myosin-binding protein 7. (425 aa)    
Predicted Functional Partners:
ACMD2_15350
Protein OBERON 4.
  
     0.517
ACMD2_05872
F-box protein SKIP28.
  
     0.469
ACMD2_09930
CCHC-type domain-containing protein.
  
     0.457
ACMD2_11883
NAC domain-containing protein 86.
  
     0.452
ACMD2_16297
VAN3-binding protein.
  
     0.448
ACMD2_23889
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.446
ACMD2_25189
VAN3-binding protein.
  
     0.443
ACMD2_08646
VAN3-binding protein.
  
     0.440
ACMD2_13919
Transcription factor bHLH53.
  
     0.423
ACMD2_12573
Protein CUP-SHAPED COTYLEDON 2.
  
     0.422
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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