Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACMD2_01977Transcription factor RAX3. (225 aa)    
Predicted Functional Partners:
ACMD2_01011
PPM-type phosphatase domain-containing protein.
      
 0.641
ACMD2_02545
PPM-type phosphatase domain-containing protein.
      
 0.641
ACMD2_06826
Two-component response regulator ORR9.
    
 0.572
ACMD2_18247
Two-component response regulator ORR4.
    
 0.572
ACMD2_00425
Dehydration-responsive element-binding protein 2C.
      
 0.566
ACMD2_18838
Dehydration-responsive element-binding protein 2C.
      
 0.566
ACMD2_20149
Zinc finger CCCH domain-containing protein 2.
      
 0.528
ACMD2_11313
Zinc finger CCCH domain-containing protein 23.
      
 0.528
ACMD2_02004
Zinc finger CCCH domain-containing protein 2.
      
 0.528
ACMD2_17102
GDSL esterase/lipase.
    
 
 0.516
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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