Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_19094TFIIS N-terminal domain-containing protein. (870 aa)    
Predicted Functional Partners:
ACMD2_10868
Putative mediator of RNA polymerase II transcription subunit 26c.
      
 0.536
ACMD2_13969
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
      
 0.512
ACMD2_20111
DNA-directed RNA polymerase I subunit RPA12.
      
 0.512
ACMD2_24152
DNA-directed RNA polymerase I subunit RPA12.
      
 0.512
ACMD2_10214
Uncharacterized protein.
  
     0.487
ACMD2_04810
Uncharacterized protein.
  
     0.478
ACMD2_12277
Deubiquitination-protection protein dph1.
  
     0.447
ACMD2_25906
Uncharacterized protein.
  
     0.439
ACMD2_18284
Uncharacterized protein.
  
     0.430
ACMD2_18487
Protein TIME FOR COFFEE.
  
     0.428
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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