STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_06943Putative pumilio, chloroplastic. (656 aa)    
Predicted Functional Partners:
ACMD2_03752
Pumilio.
   
 
 0.762
ACMD2_24516
DEAD-box ATP-dependent RNA helicase 8.
   
 
 0.729
ACMD2_10043
DEAD-box ATP-dependent RNA helicase 8; Belongs to the DEAD box helicase family.
   
 
 0.729
ACMD2_03465
DEAD-box ATP-dependent RNA helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.729
ACMD2_17220
V-type proton ATPase catalytic subunit A.
    
 
 0.687
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
   0.646
ACMD2_13460
Isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.625
ACMD2_04362
Putative CCR4-associated factor 7.
    
 
 0.621
ACMD2_13665
Putative CCR4-associated factor 7.
    
 
 0.621
ACMD2_06671
Putative CCR4-associated factor 11.
    
 
 0.621
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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