Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_06672116 kDa U5 small nuclear ribonucleoprotein component. (1003 aa)    
Predicted Functional Partners:
ACMD2_16500
Pre-mRNA-processing-splicing factor 8.
   
 0.997
ACMD2_03441
Protein STABILIZED1.
  
 0.996
ACMD2_05743
DnaJ protein ERDJ2A.
   
 0.995
ACMD2_03541
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.994
ACMD2_02844
Small nuclear ribonucleoprotein-associated protein B.
   
 0.992
ACMD2_11396
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.991
ACMD2_10595
Splicing factor 3B subunit 1.
   
 
 0.988
ACMD2_00888
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.986
ACMD2_17577
Thioredoxin-like protein YLS8.
    
 0.986
ACMD2_00768
Thioredoxin-like protein 4B.
    
 0.986
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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