STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_06672116 kDa U5 small nuclear ribonucleoprotein component. (1003 aa)    
Predicted Functional Partners:
ACMD2_03441
Protein STABILIZED1.
  
 0.999
ACMD2_16500
Pre-mRNA-processing-splicing factor 8.
   
 0.999
ACMD2_11396
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.998
ACMD2_15736
Diphthine--ammonia ligase.
   
 0.995
ACMD2_02844
Small nuclear ribonucleoprotein-associated protein B.
   
 0.994
ACMD2_05743
DnaJ protein ERDJ2A.
   
 0.990
ACMD2_01964
Pre-mRNA-processing factor 19.
   
 
 0.989
ACMD2_03541
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.989
ACMD2_12189
DEAD-box ATP-dependent RNA helicase 22.
   
 0.987
ACMD2_26287
DEAD-box ATP-dependent RNA helicase 21; Belongs to the DEAD box helicase family.
   
 0.987
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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