Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACMD2_06686Rhamnogalacturonate lyase. (635 aa)    
Predicted Functional Partners:
ACMD2_11615
Putative calcium-binding protein.
      
 0.527
ACMD2_05677
DNA repair endonuclease UVH1.
      
 0.526
ACMD2_07786
Synaptotagmin-2.
      
 0.523
ACMD2_00508
Pentatricopeptide repeat-containing protein.
      
 0.520
ACMD2_05520
Putative calcium-binding protein.
      
 0.520
ACMD2_11684
Uncharacterized protein.
      
 0.518
ACMD2_26755
Pentatricopeptide repeat-containing protein.
      
 0.518
ACMD2_04157
PHD finger protein MALE STERILITY 1.
      
 0.518
ACMD2_13020
Pentatricopeptide repeat-containing protein.
      
 0.517
ACMD2_22694
Cleavage and polyadenylation specificity factor subunit 3-II.
      
 0.517
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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