ACMD2_22391 protein (Ananas comosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACMD2_22391

Histone-lysine N-methyltransferase ASHH1. (481 aa)

Predicted Functional Partners:

ACMD2_10695

0.967

ACMD2_04809

0.960

ACMD2_18917

0.959

ACMD2_04746

0.958

ACMD2_13126

0.956

ACMD2_07580

0.955

ACMD2_10066

0.955

ACMD2_10140

0.955

ACMD2_21114

0.955

ACMD2_05055

0.955

Your Current Organism:

Ananas comosus

NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACMD2_04746	ACMD2_04809	A0A199UYU9	A0A199V1S6	FACT complex subunit SPT16.	Histone-lysine N-methyltransferase ATX4; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.577
ACMD2_04746	ACMD2_05055	A0A199UYU9	A0A199WAR2	FACT complex subunit SPT16.	PWWP domain-containing protein.	0.577
ACMD2_04746	ACMD2_07580	A0A199UYU9	A0A199UCP9	FACT complex subunit SPT16.	Histone-lysine N-methyltransferase ATX2.	0.577
ACMD2_04746	ACMD2_10066	A0A199UYU9	A0A199UWF8	FACT complex subunit SPT16.	Histone-lysine N-methyltransferase ATX4; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	0.577
ACMD2_04746	ACMD2_10140	A0A199UYU9	A0A199VAG1	FACT complex subunit SPT16.	Histone-lysine N-methyltransferase ATXR7.	0.577
ACMD2_04746	ACMD2_10695	A0A199UYU9	A0A199VBZ9	FACT complex subunit SPT16.	Protein IWS.	0.984
ACMD2_04746	ACMD2_13126	A0A199UYU9	A0A199VQQ0	FACT complex subunit SPT16.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.986
ACMD2_04746	ACMD2_18917	A0A199UYU9	A0A199UME0	FACT complex subunit SPT16.	DNA-directed RNA polymerases II, IV and V subunit 3.	0.987
ACMD2_04746	ACMD2_21114	A0A199UYU9	A0A199W7C8	FACT complex subunit SPT16.	Histone-lysine N-methyltransferase ATX2.	0.577
ACMD2_04746	ACMD2_22391	A0A199UYU9	A0A199USB4	FACT complex subunit SPT16.	Histone-lysine N-methyltransferase ASHH1.	0.958
ACMD2_04809	ACMD2_04746	A0A199V1S6	A0A199UYU9	Histone-lysine N-methyltransferase ATX4; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	FACT complex subunit SPT16.	0.577
ACMD2_04809	ACMD2_10140	A0A199V1S6	A0A199VAG1	Histone-lysine N-methyltransferase ATX4; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Histone-lysine N-methyltransferase ATXR7.	0.512
ACMD2_04809	ACMD2_13126	A0A199V1S6	A0A199VQQ0	Histone-lysine N-methyltransferase ATX4; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.444
ACMD2_04809	ACMD2_18917	A0A199V1S6	A0A199UME0	Histone-lysine N-methyltransferase ATX4; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	DNA-directed RNA polymerases II, IV and V subunit 3.	0.480
ACMD2_04809	ACMD2_22391	A0A199V1S6	A0A199USB4	Histone-lysine N-methyltransferase ATX4; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.	Histone-lysine N-methyltransferase ASHH1.	0.960
ACMD2_05055	ACMD2_04746	A0A199WAR2	A0A199UYU9	PWWP domain-containing protein.	FACT complex subunit SPT16.	0.577
ACMD2_05055	ACMD2_13126	A0A199WAR2	A0A199VQQ0	PWWP domain-containing protein.	Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.	0.444
ACMD2_05055	ACMD2_18917	A0A199WAR2	A0A199UME0	PWWP domain-containing protein.	DNA-directed RNA polymerases II, IV and V subunit 3.	0.480
ACMD2_05055	ACMD2_22391	A0A199WAR2	A0A199USB4	PWWP domain-containing protein.	Histone-lysine N-methyltransferase ASHH1.	0.955
ACMD2_07580	ACMD2_04746	A0A199UCP9	A0A199UYU9	Histone-lysine N-methyltransferase ATX2.	FACT complex subunit SPT16.	0.577