Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_27361Uncharacterized protein. (752 aa)    
Predicted Functional Partners:
ACMD2_01553
Protein SDE.
   
 0.967
ACMD2_02470
Ubiquitin-40S ribosomal protein S27a-3.
   
 0.930
ACMD2_06442
DEAD-box ATP-dependent RNA helicase 56.
    
 0.920
ACMD2_08597
Uncharacterized protein C3B8.09.
   
 0.914
ACMD2_10215
Pre-mRNA-splicing factor CWC.
   
 0.903
ACMD2_01755
Putative ATP-dependent RNA helicase rha-2.
  
0.898
ACMD2_05544
Nucleolar protein 14.
   
 0.897
ACMD2_25120
U3 small nucleolar ribonucleoprotein IMP3.
   
  0.895
ACMD2_07584
U3 small nucleolar RNA-associated protein.
   
  0.877
ACMD2_08226
G patch domain-containing protein TGH.
    
 0.877
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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