STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACMD2_24613Protein CHUP1, chloroplastic. (399 aa)    
Predicted Functional Partners:
ACMD2_11262
Nuclear cap-binding protein subunit 1.
    
 0.906
ACMD2_11740
Regulator of nonsense transcripts.
    
 0.897
ACMD2_02340
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A.
   
 0.840
ACMD2_03500
Polyadenylate-binding protein-interacting protein 4.
   
 
 0.805
ACMD2_04383
Eukaryotic translation initiation factor isoform 4G-1.
   
 0.788
ACMD2_10234
Eukaryotic translation initiation factor 4G.
   
 0.788
ACMD2_24455
Eukaryotic translation initiation factor isoform 4G-1.
   
 0.788
ACMD2_14197
Eukaryotic translation initiation factor isoform 4G-1.
   
 0.788
ACMD2_09033
Putative nucleolar protein 5-2.
   
 0.775
ACMD2_01971
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily.
    
 0.761
Your Current Organism:
Ananas comosus
NCBI taxonomy Id: 4615
Other names: A. comosus, Ananas comosus var. comosus, Ananas lucidus, pineapple
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